Algorithms for Computational Biology

Algorithms for Computational Biology

First International Conference, AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedings

Martin-Vide, Carlos; Dediu, Adrian-Horia; Truthe, Bianca

Springer International Publishing AG

08/2014

275

Mole

Inglês

9783319079523

15 a 20 dias

4453

Descrição não disponível.
Comparative Genomics Approaches to Identifying Functionally Related Genes.- A Greedy Algorithm for Hierarchical Complete Linkage Clustering.- Vester's Sensitivity Model for Genetic Networks with Time-Discrete Dynamics.- Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem.- Heuristics for the Sorting by Length-Weighted Inversions Problem on Signed Permutations.- On Low Treewidth Graphs and Supertrees.- On Optimal Read Trimming in Next Generation Sequencing and Its Complexity.- On the Implementation of Quantitative Model Refinement.- HapMonster: A Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-Informative Reads.- Mapping-Free and Assembly-Free Discovery of Inversion Breakpoints from Raw NGS Reads.- Modeling the Geometry of the Endoplasmic Reticulum Network.- On Sorting of Signed Permutations by Prefix and Suffix Reversals and Transpositions.- On the Diameter of Rearrangement Problems.- Efficiently Enumerating All Connected InducedSubgraphs of a Large Molecular Network.- On Algorithmic Complexity of Biomolecular Sequence Assembly Problem.- A Closed-Form Solution for Transcription Factor Activity Estimation Using Network Component Analysis.- SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints.- Analysis and Classification of Constrained DNA Elements with N-gram Graphs and Genomic Signatures.- Inference of Boolean Networks from Gene Interaction Graphs Using a SAT Solver.- RRCA: Ultra-Fast Multiple In-species Genome Alignments.- Exact Protein Structure Classification Using the Maximum Contact Map Overlap Metric.
algorithms;bioinformatics;combinatorics;computational biology;computational complexity;discrete mathematics;genome alignments;graph algorithms;graph theory;interaction networks;microbiome analysis;molecular networks;phylogeny;proteomics;sequence alignment;sequence analysis;sequence assembly;structure prediction;systems biology;transcriptomics